View Alignment

SCOP

Template Lengths

Model

PSSM E_value

PSSM Type

SAWTED E-value

Biotext

Class

Fold

SuperFamily

Family

Protein

Species

ID

Region

CS

d1agre_ 17%i.d.

128

With Sidechains

4.91e-06

R1D

0.00182

0.98

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling 4, RGS4

Rat (Rattus norvegicus)

1agr

e:

0.000

d1cmza_ 21%i.d.

128

With Sidechains

0.0027

R1D

0.186

0.70

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

Galpha interacting protein, GaIP

Human (Homo sapiens)

1cmz

a:

0.000

c1fqjb_ 17%i.d.

133

With Sidechains

0.0027

R1D

0.00551
 *

n/a

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

homol. to d1cmza_

-

-

1fqj

b

0.000

c1emua_ 19%i.d.

132

With Sidechains

0.0027

R1D

1 *

0.74

All alpha proteins

Regulator of G-protein signalling, RGS

Regulator of G-protein signalling, RGS

homol. to d1cmza_

-

-

1emu

a

0.000

c1gln__ 13%i.d.

468

0.226

1D

1

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1gln__

-

-

-

1gln

-

0.000

c1bg5__ 12%i.d.

254

1.05

1D

0.628

0.01

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1bg5__

-

-

-

1bg5

-

0.000

d1tfr_1 22%i.d.

123

1.06

1D

1

0.00

All alpha proteins

SAM domain-like

5' to 3' exonuclease, C-terminal subdomain

5' to 3' exonuclease, C-terminal subdomain

T4 RNase H

Bacteriophage T4

1tfr

183-305

1.000

c1d9ta_ 16%i.d.

281

1.52

1D

1

0.00

Alpha and beta proteins (a/b)

Glucosamine 6-phosphate deaminase

Glucosamine 6-phosphate deaminase

homol. to d1deaa_

-

-

1d9t

a

0.000

d1d2ra_ 17%i.d.

326

2.46

R1D

1

n/a

Alpha and beta proteins (a/b)

Adenine nucleotide alpha hydrolase-like

Nucleotidylyl transferase

Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Tryptophanyl-tRNA synthetase (TrpRS)

Bacillus stearothermophilus

1d2r

a:

0.658

d1bz4a_ 12%i.d.

144

2.75

R1D

0.921

0.02

All alpha proteins

Four-helical up-and-down bundle

Apolipoprotein

Apolipoprotein

Apolipoprotein E3

Human (Homo sapiens)

1bz4

a:

0.500

c2ezb__ 16%i.d.

249

3.02

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c2ezb__

-

-

-

2ezb

-

0.000

c1fsha_ 17%i.d.

94

3.03

1D

0.486

0.72

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1fsha_

-

-

-

1fsh

a

0.000

c1cpo__ 18%i.d.

298

3.21

1D

0.981

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1cpo__

-

-

-

1cpo

-

0.000

c1ekua_ 15%i.d.

252

3.39

1D

0.761

0.00

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1ekua_

-

-

-

1eku

a

0.000

c1htjf_ 17%i.d.

178

3.71

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1htjf_

-

-

-

1htj

f

0.000

c1j7ua_ 16%i.d.

263

5.22

R1D

1

n/a

not in SCOP 1.53

3D-PSSM pseudo-family

founder id c1j7ua_

-

-

-

1j7u

a

0.000

d1qgha_ 9%i.d.

150

6.26

1D

1

0.00

All alpha proteins

Ferritin-like

Ferritin-like

Ferritin

Dodecameric ferritin homolog DPS

Listeria innocua

1qgh

a:

0.888

d1qu2a3 10%i.d.

450

6.33

1D

0.935

0.00

Alpha and beta proteins (a/b)

Adenine nucleotide alpha hydrolase-like

Nucleotidylyl transferase

Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Isoleucyl-tRNA synthetase (IleRS)

Staphylococcus aureus

1qu2

a:1-200,a:395-644

0.500

d1dcea1 10%i.d.

332

6.67

1D

0.822

n/a

All alpha proteins

alpha-alpha superhelix

Protein prenylyltransferase

Protein prenylyltransferase

Rab geranylgeranyltransferase alpha-subunit, N-terminal domain

Rat (Rattus norvegicus)

1dce

a:2-240,a:351-443

0.000

d1ayx__ 14%i.d.

492

7.47

R1D

0.976

0.02

All alpha proteins

alpha/alpha toroid

Six-hairpin glycosyltransferases

Glucoamylase

Glucoamylase

Yeast (Saccharomycopsis fibuligera)

1ayx

-

0.886