LOCUS S70718 2246 bp mRNA INV 22-SEP-1994
DEFINITION fibrillar collagen alpha 120 and 140 chains [Hemicentrotus
pulcherrimus=sea urchins, tests, mRNA Partial, 2246 nt].
ACCESSION S70718
NID g545687
VERSION S70718.1 GI:545687
KEYWORDS .
SOURCE Hemicentrotus pulcherrimus tests.
ORGANISM Hemicentrotus pulcherrimus
Eukaryotae; mitochondrial eukaryotes; Metazoa; Echinodermata;
Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida;
Strongylocentrotidae; Hemicentrotus.
REFERENCE 1 (bases 1 to 2246)
AUTHORS Tomita,M., Kinoshita,T., Izumi,S., Tomino,S. and Yoshizato,K.
TITLE Characterizations of sea urchin fibrillar collagen and its cDNA
clone
JOURNAL Biochim. Biophys. Acta 1217 (2), 131-140 (1994)
MEDLINE 94153988
REMARK GenBank staff at the National Library of Medicine created this
entry [NCBI gibbsq 148825] from the original journal article.
This sequence comes from Fig. 5.
FEATURES Location/Qualifiers
source 1..2246
/organism="Hemicentrotus pulcherrimus"
/db_xref="taxon:7650"
gene 1..1899
/partial
/gene="fibrillar collagen alpha 120 and 140 chains"
CDS 1..1899
/partial
/gene="fibrillar collagen alpha 120 and 140 chains"
/note="This sequence comes from Fig. 5. Protein sequence
is in conflict with the conceptual translation."
/codon_start=1
/exception="Authors translate TAG as Tyr;
mismatches(478[I->M],595[Y->*])"
/product="fibrillar collagen alpha 120 and 140 chains"
/protein_id="AAB30065.1"
/db_xref="PID:g545688"
/db_xref="GI:545688"
/translation="GRSGNPGPQGELGPTGARGETGPSGSSGPTGDPGPQGPLGAPGQ
QGERGETGPQGQSGPPGPIGSLGAPGAQGPPGPTGPSGNAGSPGQPGARGEPGQTGSP
GQPGLAGTTGPPGERGDKGNDGQSGPPGPPGPTGPAGQSGILGFAGGSGPRGPGGPAG
PPGEAGSRGPPGKSGERGSPGAVGPPGNPGPAGENGMPGSDGNDGAPGPQGARGEKGD
TGASGANGSPGAPGPIGAPGAAGASGPRGETGSTGAPGPQGPTGARGSTGPAGPSGPA
GPAGERGETGPAGHKGHPGVSGLPGLQGTPGPMGEPGAPGEQGQQGTRGLPGARGSNG
NDGPAGPRGFDGPEGPRGPRGEGGSSGPPGPPGPPGPPGPPGQVQSSYGVRYPSFQSG
GKGGGASPYGYAYRDDSKNDAVKIQDTELLGAISALGQQIELIKAPQGKAKTNPARSC
KDIFLNNVEAESGYYWVDPNLGCQKDAIQVYCEAETGATCVPSTNNVVSNMTWYVGKT
KRAFFSSMHGGDKFAYIEDSTQMTFLRLLSTSARQTVTYFCKNVQGNPIFLSSSDVEL
VDDQDSKFNYRTLEDGCSSSSSQWGKSVYEYETKKTTRLPIVDFAPGEVGSESQMFGL
EMGPVCFS"
BASE COUNT 564 a 614 c 620 g 448 t
ORIGIN
1 ggccgctctg gaaaccctgg acctcaagga gagcttggac ccaccggagc taggggagag
61 actggaccat caggatcctc aggacctacc ggagacccag gaccacaggg acctcttgga
121 gccccaggac agcaaggaga acgtggagag acaggacctc agggacaaag tggaccccca
181 ggacccattg gaagccttgg agcacccgga gcacagggac cacctggacc cactggacct
241 tctggcaatg ctggtagccc aggacagcct ggagcccgtg gagagccagg acagactgga
301 tctcctggac aacctggtct tgctggaaca actggacccc ctggagagcg tggagacaaa
361 ggaaacgatg gacaaagtgg acctcccgga ccccctggac ccactggacc tgctggacaa
421 tctggaatcc ttggttttgc aggaggctct ggaccccgtg gacccggagg acctgctgga
481 ccacctggtg aagctggaag ccgtggaccc cctggaaagt ctggagaaag gggatctcct
541 ggagctgttg gacccccagg aaaccctgga cccgctggag agaatggcat gcctggaagc
601 gatggaaatg atggagcccc tggaccccaa ggagctcgtg gagagaaggg agacactggt
661 gcctctggag ccaatggatc acctggagca ccaggaccaa tcggtgcccc tggagctgct
721 ggtgcttctg gaccacgtgg tgagactgga tctactggtg ccccaggacc tcagggtcct
781 actggtgctc gtggctctac tggacctgct ggaccatctg gacccgccgg acctgctggt
841 gagcgtggag agactggacc tgctggacac aagggacatc ctggagtttc tggacttcct
901 ggtctacagg gaactcctgg acccatggga gagcctggtg cacctggaga acaaggacaa
961 cagggaacta gaggattacc tggtgcccgt ggatccaatg gaaacgatgg acccgcagga
1021 ccccgtggat ttgatggacc cgaaggaccc cgtggacctc gtggagaagg tggatcatct
1081 ggaccaccag gacccccagg acctcccgga cccccaggac caccaggaca agtccagtct
1141 tcatacggag tcagataccc atccttccag tctggcggca agggcggcgg agcatctcct
1201 tatggttatg cttacagaga cgacagcaag aatgatgccg tcaagatcca ggataccgaa
1261 cttcttggag ctatcagtgc tcttggccag cagattgaat tgatcaaggc acctcagggc
1321 aaggctaaga ccaaccccgc caggtcatgc aaagacatct tcctcaacaa tgttgaagcc
1381 gagagtggat attactgggt cgatcccaac cttggatgcc agaaggatgc tatgcaggtc
1441 tattgcgagg ccgagactgg cgctacctgc gtaccatcaa caaacaacgt tgttagcaac
1501 atgacatggt acgttggcaa gacaaagcgc gctttcttct ccagcatgca tggtggtgac
1561 aagttcgcct acatcgagga ctccacccag atgaccttcc tccgcctcct ctccaccagc
1621 gcccgccaga ccgtcaccta cttctgcaag aacgtccaag gaaacccaat cttcctctca
1681 agctctgatg ttgaacttgt cgatgaccaa gacagcaaat tcaactacag gacacttgaa
1741 gatggctgct catcctcatc atcacagtgg ggcaagtctg tctaggaata tgagaccaag
1801 aagacaacac gtctgccgat cgttgatttc gcccctggtg aagttggcag tgaaagtcag
1861 atgtttggcc tggagatggg acctgtgtgc ttttcataaa aatcctagtt cttaaactta
1921 ttaagtcgta gctaattgac tgatgccagg aacgactcca acgcagctct cccccaaaag
1981 actctaatgc tctctctcta tctctctcta ttgtgtcctt tttgtgccag tattacgacg
2041 aaacctgtca agatctggtc tagttttgtg tgaatgttac caggtggcca ttcaatcccg
2101 tagttaccat ctcacttttg tatattcgag gcttgatgaa aatatgaaag catgtttcgg
2161 acagaaggaa taaatgcgga ctgtgaagaa gaaaaaaagc ctgctgaaat tttaagcagc
2221 tgcgagtcca agctggccca tttaaa
//