2004 ASCB
Education Workshop

• Roberts: Protein Structure
• Dombrowski: GEO Microarray Database
• Johnson: Wormbase and OMIM
• Bhagwat: SNPs
• DeJongh: perl scripting
• Shoop: GO Interface

Segue to Microarrays

Microarray Animation

GCAT Resources

Expression Connection

ACS1

Segue to OMIM

OMIM Search

Fava bean

3. Casonya Johnson (bio) -> WormBase and OMIM
Morgan State University

10 minute break

Segue to SNPs

TSC at CSHL

Search 19265 and click on Search button.

Click on "TSC0019265  (a/c)"

Click on View Screening Details

Choose a link (I did first one)

Have it show you the trace.

Go to base 530 in the trace window (requires Java).
Show confidence.

Do you think this is a real SNP?

Go back to Report

Click on ss2669205 (near the top) What is the frequency of this SNP?

Click on : rs1806509 at the top of the ss2669205 report. Where does this "SNP" occur?

Final Link for APOE

4. Medha Bhagwat -> SNP databases
NCBI staff

Segue to perl scripts

Hemoglobin Mutagenesis Page

Kyte-Doolittle Page

Copy and Paste Sequence then close.

Find: ".pl"

5. Matt DeJongh (CS) -> perl programs
Hope College

Segue to Gene Ontology (GO)

SGD Term Finder for GO

Copy and Paste these 9 genes:

ELM1
SRC1
FKH1
YBL009W
STU2
SGO1
CIN8
CDC28
STB1

6. Libby Shoop (CS) -> Gene Ontology GUI
Macalester College

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