Bioinformatic Tools Workshop
Bishop Heber College

Online DNA Manipulation Tools

• optimize your gel
• oligator (make dsDNA from oligos)
• how many colonies to pick
• GCAT-alog
• ApE a quick lesson
• GGA primer designer
• hemoglobin mutation detector
• microarray clustering online
• Kyte-Doolittle plots
• Spot synthesizer online

Wet Lab Protocols

• Davidson College synthetic biology protocols
• Missouri Western State University synthetic biology protocols
• DNA Registry of Standardized Parts
• OpenWetWare

Mathematical Modeling

• Moochers and Makers (code file) - modeling theophylline production in Programmed Evolution
• Caffeine diffusion in Programmed Evolution
• cAMP signaling in Dictyostelium streaming in slime mold
• NetLogo homepage

Interactive Molecular Presentations

• FirstGlance in Jsmol
• Commands in Jsmol
• Some Examples from Davidson
  • MHC I
  • T-cell Receptor
  • Photosystem II
  • ATP synthase
  • cI from lambda
• Biotopics Jsmol List
• Protein Data Bank