Genbank Information for Mus musculusCollagen

LOCUS MUSCOLLAG 4437 bp mRNA ROD 04-JUN-1994

DEFINITION Mouse mRNA for collagen, partial cds.

ACCESSION D17546 NID g2160436

KEYWORDS collagen.

SOURCE Mus musculus embryo cDNA to mRNA, clones NA[1,12,286,2611].

ORGANISM Mus musculus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.

REFERENCE 1 (bases 1 to 4437)

AUTHORS Abe,N., Muragaki,Y., Yoshioka,H., Inoue,H. and Ninomiya,Y.

TITLE Identification of a novel collagen chain represented by extensive interruptions in the triple-helical region

JOURNAL Cellular and Molecular Biology Research 196, 576-582 (1993)

REFERENCE 2 (bases 1 to 4437)

AUTHORS Abe,N.

TITLE Direct Submission

JOURNAL Submitted (04-SEP-1993) to the DDBJ/EMBL/GenBank databases. Nobuhiro Abe, Okayama University Medical School, Molecular Biology and Biochemistry; 2-5-1, Shikata-cho, Okayama, Okayama 700, Japan (Tel:086-223-7151(ex.2390), Fax:086-222-7768)

COMMENT Submitted (04-Sep-1993) to DDBJ by: Nobuhiro Abe Dept. of Molecular Biology and Biochemistry Okayama University Medical School 2-5-1 Sikata-cho, Okayama Okayama 700 Japan Phone: 086-223-7151 x2390 Fax: 086-222-7768.

FEATURES Location/Qualifiers source 1..4437 /organism="Mus musculus" /db_xref="taxon:10090" /dev_stage="embryo" CDS <1..3423 /codon_start=1 /product="Collagen" /db_xref="PID:d1005008" /db_xref="PID:g467517"

TRANSLATION=

"QRVPFARASQGLELERGAGLFVGQAGTADPDKFQGMISELKVRK TPRVSPVHCLDEEDDDEDRASGDFGSGFEESSKSHKEDTSLLPGLPQPPPVTSPPLAG GSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIKGGMKGQKGEP GAQGPPGPAGPQGPAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGTPGRDGEPGDPGED GRPGDTGPQGFPGTPGDVGPKGEKGDPGIGPRGPPGPPGPPGPSFRQDKLTFIDMEGS GFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGINGSYAPGPAGLPGVPGKEGPPG FPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGKSGLAGSPGP VGPPGPPGPPGPPGPGFAAGFDDMEGSGIPLWTTARSSDGLQGPPGSPGLKGDPGVAG LPGAKGEVGADGAQGIPGPPGREGAAGSPGPKGEKGMPGEKGNPGKDGVGRPGLPGPP GPPGPVIYVSSEDKAIVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGE PGTIFSPDGRALGHPQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGE KGEPGDASLGFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSG PKGDKGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSS VPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPG PHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAER EELYVRVRNGFRKVLLEARTALPRGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARP WRADDILANPPRLPDRQPYPGVPHHHSSYVHLPPARPTLSLAHTHQDFQPVLHLVALN TPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNL KDEVLSPSWDSLFSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLME SYCETWRTETTGATGQASSLLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK"

3'UTR 3424..4437 /evidence=experimental polyA_signal join(3558..3563,4415..4420) /evidence=experimental polyA_site 4437 /evidence=experimental

BASE COUNT 962 a 1311 c 1345 g 819 t

ORIGIN 1 cagagggtgc catttgctcg ggcctcgcag ggactggagc tagagcgtgg cgctggcctc 61 tttgtgggtc aggctggaac agcagaccct gacaagttcc aggggatgat ctcagagctg 121 aaggtacgca aaaccccccg ggtgagccct gtgcactgtc tggatgaaga agatgatgat 181 gaagaccggg catctggaga ttttggaagt ggctttgaag aaagcagcaa gtcacacaag 241 gaggatacat ctctactacc tgggctccct cagccacctc ctgtcacttc cccacccctg 301 gctggaggca gcaccacaga agatcctaga acagaagaaa cggaggaaga cgccgcggta 361 gattctatag gagctgagac ccttcctggc acaggttcaa gcggtgcatg ggatgaggct 421 atccagaacc ccggaagggg cttgataaag ggaggtatga aaggacaaaa gggagaacca 481 ggtgcccagg gcccacctgg cccagctggg ccccagggtc ctgccggtcc agtggtccag 541 agccccaact cacaacctgt ccctggagca caaggacccc cgggacctca ggggccacca 601 gggaaggatg gcactccagg aagggatggt gaaccgggtg accctggtga agatgggaga 661 ccgggtgaca ctggacctca aggctttcca gggaccccag gagatgtggg ccctaagggc 721 gagaagggag atcctggtat tgggccccga ggacctccag ggcctccagg gccaccagga 781 ccctccttca gacaagacaa gctgaccttc attgacatgg agggatccgg tttcagcgga 841 gacatagaga gccttagagg cccacgaggc ttccctggcc ccccggggcc ccctggtgtc 901 ccaggacttc ctggtgagcc aggacgcttt gggatcaatg gttcctatgc accaggacct 961 gcaggccttc ctggtgtacc tgggaaggaa ggaccccccg gttttccagg tcccccggga 1021 cctccaggtc ctccaggcaa agagggccca ccaggagtgg ccggccagaa aggcagtgtt 1081 ggtgatgtgg gcatcccagg acccaagggg agcaaaggag accttgggcc catcggtatg 1141 cctggcaagt ctggcttggc tggatcccct gggccagttg gacccccagg acctccaggg 1201 cctccagggc caccaggacc aggatttgct gctggattcg atgatatgga aggctctgga 1261 atacccctct ggacaacagc ccgaagctct gatgggctgc agggacctcc cgggtcgccg 1321 ggactcaagg gggatcctgg agtggcaggc ctacctggag ccaagggaga agttggagca 1381 gatggagccc agggcatccc tggtccccca ggaagagaag gtgcagctgg atctccgggg 1441 ccaaaaggag agaaagggat gccgggagaa aagggaaacc caggaaaaga tggagtgggc 1501 cggccgggcc tccctgggcc tccaggacct ccagggcctg tgatctatgt gtcaagtgag 1561 gataaagcaa tagtgagcac gccaggacct gagggcaagc cagggtacgc aggctttcct 1621 ggacctgctg gaccgaaggg tgacctgggt tccaaaggcg agcagggtct tccggggccc 1681 aagggtgaga agggagagcc aggcactatc tttagtcctg atggcagagc tctgggccat 1741 ccccagaagg gagccaaggg agagccaggc tttcgaggac ccccgggtcc ttatggacga 1801 cctgggcaca agggtgaaat tggcttccct ggacggccgg gtcgacctgg aacgaatggc 1861 ttaaagggag agaaaggaga gcctggagat gccagccttg ggttcagcat gaggggattg 1921 cctggccccc ctgggcctcc aggaccccca ggtcctcctg ggatgcccat ctatgacagc 1981 aatgcatttg tggagtctgg ccgacctgga ctaccaggac agcagggtgt gcaggggcct 2041 tcaggaccaa agggtgacaa aggagaggtg ggcccacctg ggccaccagg gcaattcccc 2101 attgacctct tccacctgga agcggaaatg aagggggaca agggagaccg aggggatgct 2161 ggacagaaag gagagagggg agaacctggg gctcctggtg gtggattctt cagctcaagt 2221 gtacctggcc cacccggccc acctggatac cctggaattc cgggtccaaa gggagagagc 2281 atccgggggc cacctggccc tcctggcccg cagggacctc ctggcattgg ctatgagggt 2341 cgccagggtc ccccaggacc tccgggacct ccaggacctc cctccttccc tggccctcac 2401 agacagactg tcagtgttcc tggtcctccg ggcccacctg gtcctccagg tcccccagga 2461 gccatgggtg cctctgctgg gcaggtgagg atctgggcca cataccagac catgctggac 2521 aagatccggg aggtgccgga gggctggctc atctttgtgg ccgagaggga agagctctat 2581 gtacgcgtta gaaatggctt ccggaaggtg ctgctggagg cccggacagc cctcccgaga 2641 ggcacgggca atgaggtggc tgctttgcag cccccattgg tccagcttca tgagggcagt 2701 ccatacaccc ggagggagta ctcctattcc acggcacgac cctggcgagc agatgacatc 2761 ctggccaacc caccgcgcct gccagaccgc cagccttacc ccggagttcc acatcaccac 2821 agttcctatg tgcacctgcc gccagcccgc cccaccctct cacttgctca tactcatcag 2881 gactttcagc cagtgctcca cctggtggca ctgaacaccc ccctgtctgg aggcatgcgt 2941 ggtatccgtg gagcagattt ccagtgcttc cagcaagccc gagccgtggg gctgtcgggc 3001 accttccggg ctttcctgtc ctctaggctg caggatctct atagcatcgt gcgccgtgct 3061 gaccgggggt ctgtgcccat cgtcaacctg aaggacgagg tgctatctcc cagctgggac 3121 tccctgtttt ctggctccca gggtcaactg caacccgggg cccgcatctt ttcttttgac 3181 ggcagagatg tcctgagaca cccagcctgg ccgcagaaga gcgtatggca cggctcggac 3241 cccagtgggc ggaggctgat ggagagttac tgtgagacat ggcgaactga aactactggg 3301 gctacaggtc aggcctcctc cctgctgtca ggcaggctcc tggaacagaa agctgcgagc 3361 tgccacaaca gctacatcgt cctgtgcatt gagaatagct tcatgacctc tttctccaaa 3421 tagggcctct gccagctagg gtggcagaca gaggccatgc agaactttga cacagcgcag 3481 ggagcattca gtcagcaccc agggctctgg ctgggataca atcctgtata gttcccattt 3541 ttatgtaatc ctcaagaaat aaaaggaagc caaagagtat atttttctaa aacatttaca 3601 acagacttcc tgcccttcct ctcccacttg aactggccag tctgtgtcac agtcccttct 3661 tcctccgtgc ttggtagagc ttcctggcga agtcggacca cagctaggtc tccaccggag 3721 gcgatgccct acagttgctg cctcagacct gcagactcta tctagcctgg gatctttctg 3781 tgcagatcgt tcatacaaca gtcacatgcc atgtgctggg gacagcacag ggcaggcagt 3841 ccaaggctcc cttctcaccg cccagtggct gtgccaggca tataggcggg cacctgctca 3901 tccaggtggt aactgggtct actcatcctt gagcagtggg aaccagctct cctgactgcc 3961 ccactctcct gcagccacac tccctgccag gggaggttcc caagctcagt aactcactgt 4021 gaccccagat ctgacccccc ctcccgtcac catgggcata ggccaggaat gtggccagac 4081 ttagcctgcg tgctcatttt tccgagggcc agacgtgaca tggggcccat cctcaggttt 4141 gtctctcaga ctggcctctc tggcgacccc tgagatcctg ttcagagaac ccaaccccaa 4201 ccaagcccaa gctggacatc agcttgaagt ccagaaatct cacagcagcc acatgaagca 4261 cttgtcctat gaagggactt gtgtgcccag ggtcacaagt ggccaatcaa agccactgtg 4321 cctgcctcag gctctgctgt ccaaggattg ggacaatcca gtgggtctgg ttctgtgaca 4381 atgtgtgcta tgatgccatt tcaaagaggc accaaataaa aatgacattt tatacca