Genbank Information for Caenorhabhitis elegansCollagen

LOCUS CELSQT1A 1251 bp DNA INV 26-APR-1995

DEFINITION Caenorhabditis elegans (clone pJJ203) collagen (sqt-1) gene, complete cds.

ACCESSION J03146 NID g156445

KEYWORDS collagen; sqt-1 gene.

SOURCE Caenorhabditis elegans (clone: pJJ203) DNA.

ORGANISM Caenorhabditis elegans Eukaryotae; mitochondrial eukaryotes; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae; Caenorhabditis.

REFERENCE 1 (bases 1 to 1251)

AUTHORS Kramer,J.M., Johnson,J.J., Edgar,R.S., Basch,C. and Roberts,S.

TITLE The sqt-1 gene of C. elegans encodes a collagen critical for organismal morphogenesis

JOURNAL Cell 55 (4), 555-565 (1988)

MEDLINE 89028667

COMMENT Draft entry and computer-readable sequence [1] kindly submitted by J.M.Kramer, 24-OCT-1988.

FEATURES Location/Qualifiers source 1..1251 /organism="Caenorhabditis elegans" /db_xref="taxon:6239" /clone="pJJ203" mRNA 151..>1194 /gene="sqt-1" exon <151..291 /gene="sqt-1" /number=1 gene join(151..291,339..1172) /gene="sqt-1" CDS join(151..291,339..1172) /gene="sqt-1" /codon_start=1 /product="collagen" /db_xref="PID:g156446"

TRANSLATION=

"MSVKLACYVTASVTVATLMVCFMTMSTIYSEVDGFREKLDTEMN VFRQSTNGLWKDIVVIGRSSKRVRRQYEETNATPTPHADGSPSAPPGQPPAVPPVFNQ PKTPNGANGNGPTCNCNADNKCPAGPSGPKGVPGVPGLDGVPGLDGVPGVGADDIVPQ RESVGCFTCPQGPVGPPGALGRPGPRGLPGPRGQNGNPGRDGQPGHPGEQGSSGQIGK IGEPGPPGEKGRDAEHPIGGPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSG KQGRQGPDGTQGETGPDGRPGKDAEYCQCPDKSPPSEAVNANRGYRNI"

intron 292..338 /gene="sqt-1" /number=1 exon 339..>1172 /gene="sqt-1" /number=2

BASE COUNT 398 a 287 c 308 g 258 t

ORIGIN Chromosome 2.3; 225 bp upstream of HincII. 1 caaaaaaaac ttgaaaactt gcggaaagat ttcctaataa aaggagacga atccggtagg 61 aaatcgacaa gtctctgctt ctcgaagact aggtgagtta catttctttg gccgaattat 121 tttgaaatcc taaatttgat aatttcagag atgtctgtaa aacttgcgtg ttatgtgacg 181 gcttcggtca ctgtcgccac tcttatggta tgcttcatga ccatgtcaac catctactcg 241 gaggttgatg gattcagaga gaagcttgat accgagatga atgtgttcag agtgagttaa 301 attatatttt gaattttaaa taatttttaa ttttctagca atctaccaat ggattgtgga 361 aggacatagt tgtcatcgga agatctagca agcgtgtccg tcgtcaatat gaagagacca 421 acgctacccc aactccacat gctgatggat ccccatctgc tccaccaggt caaccaccag 481 cagttccacc agtcttcaac cagccaaaga ctccaaatgg agccaatgga aatggaccaa 541 cctgcaactg caatgctgat aacaagtgcc cagctggacc atccggacca aagggagttc 601 caggagttcc aggactcgac ggagttccag gacttgacgg tgttccagga gttggagctg 661 atgatatcgt cccacaacgc gagtctgtcg gatgcttcac ttgcccacaa ggaccagttg 721 gaccaccagg agctcttgga agaccaggac cacgtggact tccaggacca agaggacaaa 781 atggaaaccc aggaagagat ggacaaccag gacatccagg agagcaagga tcatccggtc 841 aaatcggaaa gatcggagag ccaggaccac caggagagaa gggacgcgac gccgagcatc 901 caatcggagg accaggacca aagggaccaa gaggagatca aggaccaaca ggaccagctg 961 gacagaacgg tcttcacgga ccaccaggag agccaggaac cgttggacca gaaggaccat 1021 ctggaaagca aggacgtcaa ggaccagacg gaacccaggg agagactgga ccagacggaa 1081 gaccaggaaa ggatgccgag tactgccagt gcccagacaa gtctccacca tcagaggctg 1141 tcaacgccaa ccgtggatac agaaatatct aaattgttgg tgttttctaa taaaatattt 1201 gagattcagc ttgttccgat taaaaattta gaaaaatttt ccaaaaaaat a