Gene Networks Database


Lytechinus pictus Genes in Development: Actins


LpC3


Function

LpC3 gene codes for the cytosceletal type actin (Fang et al., 1996). Actin represents one of the most abundunt and best characterized structural components in eucaryotic cells, involved in a wide variety of cytoskeletal, locomotive, and tension-generating functions (Davidson, 1989).
Each haploid L. pictus genome contains a single copy of each of the actin genes LpC1, LpC2, LpC3, LpC4, and LpM. Southern blot analysis of genomic DNA clones have detected no close linkage of L.pictus actin genes in contrast to the cytosceletal actins of S. purpuratus, which are clustered into two linkage groups of related genes (Fang et al., 1996).

Protein

LpC3 protein belongs to a family of the cytoskeletal actins (Fang et al., 1996).
SWISS_PROT: Q25379

Subcellular location

Cytoplasmic

Expression Pattern

The LpC3 and LpC4 transcripts showed similar temporal patterns of accumulation and are much more less abundant than the LpC1 and LpC2 mRNAs. The transcripts are not detected until the mesenchyme blastula stage. The level of transcripts increase during gastrulation and remains constant through the prefeeding pluteus stage. The LpC3 probe hybridized to two transcripts of different size.
Whole mount in situ hybridization showed little staining in some mesenchyme cells, presumably secondary, at late gastrula and plutei (Fang et al., 1996).

mRNA level

Temporal accumulation

Method: Nothern blot hybridization
Reference: Fang et al., 1996

Stage
Egg
Mesenchyme blastula
Gastrula
Prism
Pluteus
Level
-
+
+
+
+

Spatial localization

Method: Whole mount in situ hybridization
Reference: Fang et al., 1996

Stage
Late gastrula
Pluteus
Tissue
Some mesenchyme cells, presumably secondary
Some mesenchyme cells, presumably secondary


Sequences

GenBank:

Regulatory Regions


Regulatory Connections

Upstream Genes

LpC3

Downstream Genes


Evolutionary homologues

  • CyI Strongylocentrotus purpuratus
  • CyIIa Strongylocentrotus purpuratus
  • CyIIb Strongylocentrotus purpuratus
  • CyIIIa Strongylocentrotus purpuratus
  • CyIIIb Strongylocentrotus purpuratus
  • M actin Strongylocentrotus purpuratus
  • LpC2 Lytechinus pictus
  • LpC1 Lytechinus pictus
  • LpC4 Lytechinus pictus
  • LpM Lytechinus pictus
  • Sf15a S. franciscanus
  • Sf15b S. franciscanus
  • PoCy P. ochraceus
  • PoM P. ochraceus

    Links

    Bibliography


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